arima high coverage hic kit (Arima Genomics Inc)

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Arima Genomics Inc arima high coverage hic kit
Arima High Coverage Hic Kit, supplied by Arima Genomics Inc, used in various techniques. Bioz Stars score: 99/100, based on 1638 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/arima+high+coverage+hic+kit/High+Coverage+HiC/bio_rxiv__64898__2026__05__14__725108-70-6-11
Average 99 stars, based on 1638 article reviews

arima high coverage hic kit - by Bioz Stars, 2026-10

99/100 stars

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Hi-C:

Article Title: Haplotype-resolved genome assemblies of BJ and IMR-90 human fibroblast cell lines reveal extensive structural variation and enable reanalysis of historical sequencing data
Article Snippet: .. Hi-C assays were performed on frozen crosslinked cell pellets using the Arima High Coverage HiC Kit (Arima Genomics, Cat. No. A101030) and libraries were prepared using Arima Library Prep Kit v2 (Arima Genomics, Cat. No. A303011) per manufacturer’s instructions. .. 1.5 μg of proximally ligated DNA suspended in 130 μl of the elution buffer was added to a microTUBE (Covaris, Cat. No. 520 045) and sonicated using a Covaris E220 with the following parameters: temperature (4°C–7°C), peak incident power (105), duty factor (5%), cycles per burst (200), treatment time (75 s).

Article Title: Integrative functional genomics analysis identifies pleiotropic genes for vascular diseases
Article Snippet: Two independent H3K27ac ChIP-seq on human coronary artery smooth muscle cells ( > 1 × 10 7 ) (ThermoFisher Scientific, C-017-5C) were performed, prior to enriching ligated junctions. .. Hi-C was performed with the use of the Arima High Coverage HiC Kit (Arima Genomics, A410110) according to the manufacturer’s protocol. .. Hi-C was performed with the use of the Arima High Coverage HiC Kit (Arima Genomics, A410110) according to the manufacturer’s protocol.

Article Title: Integrative functional genomics analysis identifies pleiotropic genes for vascular diseases.
Article Snippet: .. Hi-C was performed with the use of the Arima High Coverage HiC Kit (Arima Genomics, A410110) according to the manufacturer’s protocol. .. Thereafter, sheared chromatin samples were subjected to immunoprecipitation by an incubation with 5μg ChIP-grade anti-histone H3 (acetyl K27) antibody (Abcam, ab4729) and 50μl Dynabeads Protein G for Immunoprecipitation (ThermoFisher AR TI CL E IN P RE SS Scientific, 10004D) overnight at 4C.

Article Title: Chromosomal Fusions Shaped the Genome of the Greater Hornwrack Bryozoan (Flustra Foliacea) (Linnaeus, 1758).
Article Snippet: .. A Hi-C library was prepared using the Arima High Coverage HiC kit (Arima Genomics), following the manufacturer’s recommendations and using part of the colony. .. Final library quality was quantified using a Kapa Library quantification kit for Illumina (Roche Inc.).

Article Title: A haplotype-resolved bluethroat ( Luscinia s. svecica ) genome assembly uncovers the complex MHC region
Article Snippet: .. Starting with 10-15 μl frozen nucleated blood, a Hi-C library was prepared using the Arima High Coverage HiC kit (Arima Genomics Inc.), following the manufacturer’s recommendations (document part number A160162v01). .. Final library quality was assayed as above in addition to qPCR using the Kapa Library quantification kit for Illumina (Roche Inc.).

Article Title: Chromosome-level genome assemblies of the red algae Porphyra dioica and Porphyra linearis
Article Snippet: Semi-purified nuclei were isolated using the Cellytic PN Isolation/Extraction Kit (Sigma-Aldrich, St. Louis, MO, USA). .. Hi-C libraries were generated using the Arima High Coverage HiC Kit (Arima Genomics, Carlsbad, CA, USA; A410110) following the manufacturer’s specifications. ..

Ligation:

Article Title: De novo genome assembly of Ansell's mole-rat ( Fukomys anselli )
Article Snippet: It was quantified with Qubit ssDNA Assay Kit (Invitrogen) and sequenced on Illumina NovaSeq X Plus instrument in a 2 × 150 bp configuration, which generated 400.81 GBases of data. .. An Arima High Coverage HiC kit (Arima Genomics) was used to generate proximally ligated DNA according to the manufacturer's protocol (A160162 v01), with the following modifications: the liver was pulverized with CP02 CryoPrep Dry Pulverizer (Covaris) instead of mortar and pestle; step 2 of the proximal ligation was extended to 20 min. A library compatible with Illumina sequencing was prepared with the Arima Library Prep Module (Arima Genomics), according to the protocol for Arima High Coverage HiC kit (Document number: A160186 v02). .. The concentration and size distribution of the library were measured with Qubit 1X dsDNA High Sensitivity Assay kit (Invitrogen) and D5000 ScreenTape Assay on TapeStation (Agilent Technologies), respectively.

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